Fragment Analyzer System

The Fragment Analyzer systems utilize automated parallel capillary electrophoresis to provide reliable quality control (QC) for nucleic acids. With its unique design and intuitive features, common QC bottlenecks are resolved by the automation of key steps such as gel loading and sample injection increasing lab efficiency. A broad range of kits are available allowing you to easily qualify and quantify DNA and RNA samples. Choose from three models with varying throughputs to match your labs needs.


Life Science – Lab Instrument – Automated Electrophoresis
Industry – Lab Instrument – Automated Electrophoresis
Animal Health – Lab Instrument – Automated Electrophoresis


Dimensions (WxDxH)35 cm x 51 cm x 61 cm
Line Frequency47-63 Hz
Line Voltage100-240 VAC
Number of Samples per Run96
Operating Environment Relative Humidity20-80 %
Power Consumption150 VA
Weight38.5 kg
  • Separate 12, 48 or 96 samples in parallel with a single simple dilution step and easy instrument set up
  • Choose between three different capillary array lengths for the required blend of speed or resolution
  • Minimize instrument preparation time with no daily array handling requirements and room-temperature stable reagents
  • Load and separate up to 288 samples for unattended and automated analysis of large numbers of samples
  • Use quality metrics for RNA (RQN) and genomic DNA (GQN) to remove subjective quality assessments
  • See clear results with the high sizing accuracy and precision along with separation resolution as good as 3 bp from fragments under 300 bp
  • Kits provide a wide dynamic range covering two orders of magnitude
  • Achieve accurate molarity calculations with reliable smear analysis
  • Assessment of Genomic DNA Quality
  • Accurate QC Analysis of cfDNA
  • Single-Guide RNA Quality Assessment for CRISPR
  • DNA/PCR Fragment Analysis
Catalog No.Description
M5310AA5200 Fragment Analyzer
Optional Array FA-12 with Ultra Short, Short, Long
M5311AA5300 Fragment Analyzer
Optional Array FA-48 Short, FA-96 Short and Long
M5312AA5400 Fragment Analyzer
Optional Array FA-96 Short and Long
M5320AAZAG DNA Analyzer System
Optional Array ZAG-96 Short and Long
  • Separation of cfDNA with the Agilent HS NGS Kit on the Agilent 5200 Fragment Analyzer System
  • Quality Analysis of Eukaryotic Total RNA with the Agilent 5200 Fragment Analyzer System
  • Plant RNA Degradation Detection Using the Agilent 5200 Fragment Analyzer System
  • Use of an Engineered Restriction Site to Estimate CRISPR Homology‑Directed Repair Efficiency
  • Single-Guide RNA Quality Assessment with the Agilent 5200 Fragment Analyzer System
  • Assessment of Genomic DNA Quality with the Agilent 5200 Fragment Analyzer System